Now Available: Early Access Reagent Kits for Multiplexed Epitranscriptome Analysis

Multiomics tools for epigenomic discovery

Alida Bio is pioneering technology for next-generation epigenetic analysis that will empower a new wave of research, therapeutics, and diagnostics.

Our Focus Understanding complex relationships in gene regulation

Epigenetic markers, including modifications of DNA, RNA and histone proteins, work in concert to control how the genetic code is used in health and disease. Unlike current methods that detect single modifications one at a time, our technology accurately detects and locates many epigenetic markers simultaneously.

Finally, multiplexed
epigenomics has arrived

Announcing the EpiPlex RNA Reagent Kit:
Profile the epitranscriptome with accuracy, sensitivity, and ease

AlidaBio is excited to announce the launch of the EpiPlex™ Library Prep Kit, which is available now during early access. The EpiPlex Library Prep Kit is a proximity barcoding based assay for the multiplexed detection of RNA modifications in mRNA and long ncRNA.

Using next-gen sequencing as a readout, the assay reports on RNA modification identity, location and relative quantity at each locus, along with full RNA-seq data. This first release of the assay reads N6 methyl-adenosine (m6A) and inosine (I) concurrently.

Assay requirements:
20 ng mRNA or 250 ng total RNA per sample, DNAse treated

What you get

8 samples per kit
1 day library preparation workflow
Readout by Next-Gen sequencing
EpiScout Analysis Suite included

Contact us to try it! [email protected]

Reading the Epitranscriptome

The epitranscriptome encompasses all naturally occurring chemical modifications of RNA. While our understanding of the epitranscriptome is still incomplete, there is ample evidence for a critical role of RNA modifications, including vital functions in cancer progression, drug resistance, cell differentiation and viral infection.

Our mission is to create innovative technology for reading of the epitranscriptome.

Applications

New Drug Targets

RNA modification writers, erasers and readers are becoming important cancer drug targets. Drugs targeting histone modification writers and erasers are already in the clinic.

Therapeutics

Therapeutic RNA editing is gaining traction, because unlike CRISPR and prime editing of DNA, editing of RNA does not permanently alter a cell and its progeny and may have a lower risk of long-term side effects.

Basic and Clinical Research

Identifying and locating RNA modifications will improve the understanding of systems biology and disease mechanisms, delivering new diagnostics and better treatment regimes.

Technology

Multiplexed target panels

With our assay you will be able to study the RNA modifications that are most relevant to your biological question. Obtaining the identity and location of multiple RNA modifications from the same experiment saves hands-on time and reduces variability.

Reduced sample input

Our assay provides the RNA modification landscape and RNA expression profile in a unified approach, enabling correlative data analysis at a new scale.

Quantitation

Some RNA modifications are known to be dysregulated in disease. To unlock their full potential, accurately quantitating their occurrence is indispensable. Our assay contains normalization controls to provide the relative fraction of modified and unmodified RNA for a given transcript.

Bioinformatics

The interpretation of genomics data tends to be complex, time consuming and highly customized by the end user. To get the most of our new data type, we are developing a proprietary analysis pipeline that is accessible via cloud or as desktop application.

Partnerships for Early Access

Our experienced team can provide tailored solutions and end-to-end analyses for your research needs. We work with pharmaceuticals, diagnostics, agricultural sciences, and other sectors to bring bespoke solutions to complex problems.

Leadership Team

Gudrun Stengel, PhD
CEO & Co-Founder

Gudrun Stengel, PhD

CEO & Co-Founder

As the leader of Alida Biosciences, Gudrun brings over a decade of genomics product development experience, from pioneering genomic analysis of tumor tissue at Affymetrix, to leading technical teams at Illumina for the NovaSeq™ platform, which is the highest output and quality DNA sequencer on the global market. Equipped with an in-depth understanding of the product development process, Gudrun ventured out into the VC-backed startup world. She joined Encodia, a proteomics company that uses DNA barcoding to reverse translate primary amino acid sequence into DNA sequence, where she developed fundamental technology to secure series B funding. Before Gudrun founded Alida Biosciences in fall 2021, she developed clustering and SBS reagents for Element Bio’s AVITI™ sequencing platform at Element Biosciences.

Gudrun was a postdoctoral researcher at the Scripps Research Institute and the University of Colorado Boulder. Gudrun received her Ph.D. in Biophysical Chemistry at the Max Planck Institute in Germany. Throughout her academic career she published more than 20 articles in peer-reviewed journal.

Byron Purse, PhD
Co-Founder

Byron Purse, PhD

Co-Founder

As co-founder of Alida Biosciences, Byron manages chemistry projects and plays a key role in creating the patent portfolio and securing federal startup funding, which has translated into three NIH Small Business Innovation Awards.

Byron is a Professor of Organic Chemistry at San Diego State University, where he leads an NSF-funded research team focused on chemical biology of nucleic acids. Byron has over 35 publications in top-ranked chemistry journals and as a project leader in academia has raised several million dollars in federal research funding. Byron received his Ph.D. in Organic Chemistry at the Scripps Research Institute.

Andrew Price, PhD
Vice President, R&D

Andrew Price, PhD

Vice President, R&D

Andrew brings 10 years’ experience scaling and successfully developing commercial solutions at biotech startups having directed R&D teams at all phases of product development. At previous innovative genomics companies including 10X Genomics and Element Biosciences, he has contributed to the launch of ground-breaking products such as Chromium WGS, Chromium 3’ Single Cell Gene Expression and the AVITI™ sequencing platform.

He completed his Ph.D. in Chemical Engineering at the University of Colorado – Boulder with continuing postdoctoral training in nanoscience and macromolecular chemistry at The University of Melbourne and Sandia National Laboratories.

Zachary Miles, PhD
Director of Protein Engineering

Zachary Miles, PhD

Director of Protein Engineering

Zach leads the Protein Engineering Department at Alida Bio with extensive experience translating protein and enzyme design concepts into next-generation biological components for diverse industries. He previously worked at BASF Enzymes in San Diego, engineering enzymes as additives for various industrial and commercial purposes, such as personal care chemicals and biofuel production. Prior to his current role, he led the Protein Engineering group at Encodia where he was responsible for development of the biological binding reagents in their single-molecule protein sequencing technology.

Zach completed his Ph.D. at the University of Arizona where his doctoral work focused on the discovery and biochemical characterization of enzymes involved in the biosynthesis of a ubiquitous tRNA modification.

Eric Davis, PhD
Head of Software and Bioinformatics

Eric Davis, PhD

Head of Software and Bioinformatics

The Head of Software and Bioinformatics at Alida Biosciences since June 2024, Eric Davis brings a wealth of experience in software engineering and bioinformatics. Previously, he was the Associate Director of Software Engineering at PacBio, overseeing analytical software projects. His career includes roles at Omniome as Manager of Analytical Software Engineering, and as a Bioinformatics Scientist at St. Jude Children’s Research Hospital. With a solid background in both software development and bioinformatics, Eric has driven advancements in genomic technologies and analytical software solutions across various institutions.

Natasha Moshirian Wagner
Vice President of Product Marketing

Natasha Moshirian Wagner

Vice President of Product Marketing

Natasha Moshirian Wagner is the Vice President of Product Marketing at Alida Biosciences, where she has served since June 2024. She previously held senior roles at Encodia and PacBio, managing product development and marketing for next-generation sequencing genomics and proteomics technologies. With over a decade of experience, including leadership positions at Omniome, TriLink BioTechnologies, Maravai Lifesciences and Invivoscribe, Natasha has a proven track record in strategic marketing, product launches, and corporate expansion within the biotechnology sector.

Scientific Advisory Board

Richard Gregory, PhD
Professor, Harvard Medical School
Principal Investigator, Boston Children’s Hospital

Richard Gregory, PhD

Professor, Harvard Medical School
Principal Investigator, Boston Children’s Hospital

Richard I. Gregory is Professor in the Departments of Biological Chemistry and Molecular Pharmacology, and Pediatrics at Harvard Medical School, and Principal Investigator in The Stem Cell Program in the Division of Hematology/Oncology at Boston Children’s Hospital. He is also Principal faculty member of The Harvard Stem Cell Institute,  and a 2008 Pew Scholar.

He received a PhD from Cambridge University, UK in 2001, studying genomic imprinting at the Babraham Institute. Gregory performed his postdoctoral work at the Fox Chase Cancer Center and the Wistar Institute, Philadelphia. His postdoctoral research focused on mechanisms of miRNA biogenesis and function, and was supported by a Jane Coffin Childs Research Fellowship.

Peter Dedon, MD, PhD
Professor and Lead Principal Investigator, Massachusetts Institute of Technology

Peter Dedon, MD, PhD

Professor and Lead Principal Investigator, Massachusetts Institute of Technology

Following graduation with a B.A. in Chemistry from St. Olaf College in 1979, Pete Dedon obtained an M.D. and a Ph.D. in Pharmacology from the University of Rochester in 1987. He then pursued postdoctoral research in chromatin biology at the University of Rochester and the chemical biology of DNA-cleaving anticancer drugs at Harvard Medical School. In 1991, Dedon joined the MIT faculty and helped create the Department of Biological Engineering in 1998. As an Underwood Prescott Professor in Biological Engineering, he is currently the Lead PI in the SMART Antimicrobial Resistance group and a member of the MIT Center for Environmental Health Sciences.

Ralph Kleiner, PhD
Associate Professor and Principal Investigator, Princeton University

Ralph Kleiner, PhD

Associate Professor and Principal Investigator, Princeton University

Ralph Kleiner was born in Syracuse, NY and attended Princeton University, where he received an A.B. in Chemistry and performed research on the de novo design of 4-helix bundle proteins in the laboratory of Michael Hecht. He then completed his Ph. D. in Chemistry at Harvard University under the direction of David Liu, where he used DNA-templated chemistry to identify novel macrocyclic inhibitors of Src kinase and Insulin-Degrading Enyzme (IDE). He went on to conduct his postdoctoral studies as a Damon Runyon Postdoctoral Fellow and Revson Foundation Fellow with Tarun Kapoor at The Rockefeller University. His postdoctoral work used chemical proteomics to study phosphorylation-dependent protein-protein interactions in the DNA damage response. In September 2016, Ralph began his appointment as an Assistant Professor in the Department of Chemistry at Princeton University. His research lies on the interface of chemistry and biology, focusing on the development and application of novel chemical approaches to study the post-transcriptional regulation of RNA by epitranscriptomic modifications and RNA-binding proteins.

He is a recipient of the Damon Runyon Dale F. Frey Award for Breakthrough Scientists, the Sidney Kimmel Foundation Scholar Award, an Alfred P. Sloan Foundation Research Fellowship, the National Science Foundation CAREER Award, and the ICBS Young Chemical Biologist Award.

Careers We're always looking for new talent.

As an early stage company, we offer a vibrant, diverse, and creative environment with excellent opportunities for career growth.

Located in the heart of the San Diego biotech community, we provide competitive salaries and benefits, such as an employee stock plan, health coverage, 401K plan, work out facilities, PTO, sick leave, and paid holidays.

Latest Articles Company News

June 10-13, 2024

Alida Bio will hold a workshop at the Genome Technology Forum at JAX, Farmington, CT


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May 28 - June 2, 2024

Alida Bio announces its reagent kit at the 2024 RNA Society meeting, Edinburgh, Scotland


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February 4 - 7, 2024

Alida Bio attends the Keystone Symposium, Epigenetic Mechanisms and Cancer Treatment, Santa Fe, NM

April 5 - 10, 2024

Alida Bio presents a poster at the American Association Cancer Research (AACR) meeting, San Diego, CA

December 12-15, 2023

Alida Bio gives a talk at the Keystone Symposium, RNA Modifications in Health and Disease, Banff, Canada

October 4, 2023

Genomeweb publishes an article about Alida Bio and its approach to multiplexed epigenomics


Read More
September 9-11, 2023

Alida Bio presents its work at AGBT Precision Health, San Diego, CA

Funding

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You can find us here:

11535 Sorrento Valley Rd. Ste. 407 San Diego, CA 92121

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